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INDEX

Addgene is a nonprofit plasmid repository. We store and distribute high-quality plasmids from your colleagues.

AMERICAN JOURNAL EXPERTS

American Journal Experts (AJE) is the leading provider of English Editing and manuscript preparation services for scholarly publishing. Additional PDF for responding to reviewers (https://www.aje.com/dist/docs/AJE-Responding-to-Reviewers-2015.pdf)

American Type Culture Collection (ATCC) is a nonprofit, global biological resource center and standards organization and the leading developer and supplier of authenticated cells lines and microorganisms. We leverage our rich history and knowledge to provide the products, services, and resources scientists need to conduct critical life science research.

The Bloomington Drosophila Stock Center (BDSC) collects, maintains and distributes Drosophila melanogaster strains for research.

Legacy R&D software is a drain on scientific potential. It slows down R&D progress, scatters data across silos, and wipes out institutional knowledge.

Bio-protocol publishes high quality step-by-step peer-reviewed protocols in any area of life sciences, including but not limited to biochemistry, cancer biology, cell biology, developmental biology, immunology, microbiology, molecular biology, neuroscience, plant science, stem cell biology, and systems biology.

Biocompare is the leading resource for up-to-date product information, product reviews, and new technologies for life scientists.

BioContainers is a community-driven project that provides the infrastructure and basic guidelines to create, manage and distribute bioinformatics containers.

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. Python is an object oriented, interpreted, flexible language that is becoming increasingly popular for scientific computing.

BioRender has revolutionized the way we draw and communicate our science. Because of the large number of pre-drawn icons and color schemes to choose from

With Binder, open those notebooks in an executable environment, making your code immediately reproducible by anyone, anywhere.

Bitbucket is more than just Git code management. Bitbucket gives teams one place to plan projects, collaborate on code, test, and deploy.

BrainMaps.org, is an interactive, multiresolution next-generation brain atlas

Cancerxgene will help you find drug response data and genomic markers of sensitivity.

The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets

Cellosaurus - a knowledge resource on cell lines

Cell Symposia bring together Cell Press editors, exceptional speakers, and scientists to discuss topics at the forefront of scientific research.

The Caenorhabditis Genetics Center (CGC) is supported by the National Institutes of Health - Office of Research Infrastructure Programs (P40 OD010440). The CGC has been in operation since 1978, first at the University of Missouri, Columbia and since 1992 at the University of Minnesota, Twin Cities.

CiteAb provides high quality life science market data that is used by many of the world’s leading reagent companies to make more informed strategic, product development and marketing decisions.

Colaboratory, or "Colab" for short, allows you to write and execute Python in your browser, with zero configuration required, free access to GPUs and easy sharing.

CONNECTED PAPERS

Connected Papers is a visual tool to help researchers and applied scientists find academic papers relevant to their field of work.

Conda is an open source package management system and environment management system that easily creates, saves, loads and switches between environments on your local computer. Theres also Bioconda.

The Catalogue Of Somatic Mutations In Cancer (COSMIC), is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer.

The Database for Annotation, Visualization and Integrated Discovery (DAVID) provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes.

The goal of the Dependency Map (DepMap) portal is to empower the research community to make discoveries related to cancer vulnerabilities by providing open access to key cancer dependencies analytical and visualization tools.

DIRECTORY OF RANDOMIZATION TOOLS

This is a directory of randomisation software and services for clinical trials, including both simple do-it-yourself software and 24 hour telephone randomisation services. It is intended to help people planning and seeking funding for clinical trials.

Create data management plans that meet institutional and funder requirements.

The Developmental Studies Hybridoma Bank (DSHB) is a National Resource, created 34 years ago by NIH and housed at the University of Iowa.

The Experimental Design Assistant (EDA) is a free online tool from the NC3Rs, designed to guide researchers through the design of their experiments, helping to ensure that they use the minimum number of animals consistent with their scientific objectives, methods to reduce subjective bias, and appropriate statistical analysis.

eLabInventory is a highly customizable LIMS–laboratory inventory management solution–designed to fit your unique inventory, sample, and specimen tracking workflow.

eLabJournal is an all-in-one Electronic Lab Notebook suitable for any lab setting ranging from small academic institutions and start-up companies to large academic institutions and globally operating companies.

eLabProtocols is a quick and easy-to-use system for designing protocol templates and Standard Operating Procedures (SOPs).

Resources provided by the e-Mouse Atlas Project (EMAP) are the EMA Anatomy Atlas of Mouse Development and the EMAGE Gene Expression Database.

ENCYCLOPEDIA OF SIGNALING MOLECULES

This encyclopedia presents 350 biologically important signaling molecules and the content is built on the core concepts of their functions along with early findings written by some of the world’s foremost experts.

EndNote is a reference manager that helps you save time formatting citations, so you can focus on your research.

European Saccaromyces Cerevisiae Archive For Functional Analysis (EUROSCARF). The EUROSCARF collection center has been set up for the deposit and delivery of biological materials generated in genome analysis networks.

A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies.

FICTIONLESS DATA

Frictionless is an open-source toolkit that brings simplicity to the data experience - whether you're wrangling a CSV or engineering complex pipelines.

File Drawer Data Liberation Effort (FIDDLE). This “match-making” tool helps you to identify alternate ways of publishing information from well-designed experiments that is often difficult to publish in traditional journals (i.e. null or neutral results, datasets, etc.).

figshare enables you to host large amounts of data in your online articles with no impact on your infrastructure

GALAXY COMMUNITY HUB

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational research.

Gene Expression Profiling Interactive Analysis (GEPIA) has been a valuable and highly cited resource for gene expression analysis based on tumor and normal samples from the TCGA and the GTEx databases.

GitHub, Inc. is a provider of Internet hosting for software development and version control using Git. It offers the distributed version control and source code management functionality of Git, plus its own features

GitLab Inc. is the open-core company that provides GitLab, the DevOps platform that combines the ability to develop, secure, and operate software in a single application.

GREAT EXPECTATIONS

Great Expectations is a shared, open standard for data quality. It helps data teams eliminate pipeline debt, through data testing, documentation, and profiling.

A versatile statistics tool purpose-built for scientists-not statisticians. Get a head start by entering data into tables that are structured for scientific research and guide you to statistical analyses that streamline your research workflow. No coding required.

Aiming to map every cell type in the human body, the Human Cell Atlas (HCA) will transform our understanding of biology and disease, and could lead to major advances in the way illnesses are diagnosed and treated.

The Human Protein Atlas (HPA) open access resource for human proteins. Search for specific genes/proteins or explore the 10 different sections

The International Cell Line Authentication Committee (ICLAC) aims to make false or misidentified cell lines more visible, and promote awareness and authentication testing as effective ways to combat the problem.

JOURNAL OF OPEN SOURCE SOFTWARE

The Journal of Open Source Software is a developer friendly, open access journal for research software packages.

JoVE is the world-leading producer and provider of science videos with the mission to improve scientific research and education.

Project Jupyter exists to develop open-source software, open-standards, and services for interactive computing across dozens of programming languages.

Research Data Management Platform. Fast. Easy. Flexible. Secure. Compliant.

Your All-in-One Electronic Lab Notebook (ELN). Run your lab more efficiently and maximize your research output. Plan and document experiments, track progress, streamline lab logistics, and share results.

Medical and health news service that features the most comprehensive coverage of a variety of fields.

Mendeley brings your research to life, so you can make an impact on tomorrow. Search over 100 million cross-publisher articles and counting.

METRICS TOOLKIT

The Metrics Toolkit provides evidence-based information about research metrics across disciplines, including how each metric is calculated, where you can find it, and how each should (and should not) be applied.

Mutant Mouse Resource and Research Centers (MMRRC). NIH & DHHS established the Mutant Mouse Resource & Research Centers to serve the scientific community. The MMRRC was started in 1999 with funding through cooperative research agreements (U42) that involve development of animal model resources.

Our first ready-to-use online data analysis tools for popular bio-assays.

MyCurveFit is an easy-to-use online curve fitting tool.

NATURE CONFERENCES

Nature Research is distinguished by its scientific excellence, breadth of coverage, timeliness of topics, and commitment to clear scientific communication. In keeping with this tradition, Nature Conferences are aimed at the international scientific community, with the goal of fostering and facilitating communication and collaboration between scientists.

The National Xenopus Resource (NXR) is located at the Marine Biological Laboratory (MBL) in Woods Hole, Massachusetts. The MBL is an international center for research, education, and training in biology, biomedicine, and ecology.

Observable allows us to coalesce the knowledge of many data scientists, engineers, and domain experts into one cohesive document.

OpenRefine (previously Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.

OPEN SCIENCE FRAMEWORK

Open Science Framework (OSF) is a free, open platform to support your research and enable collaboration.

OpenWetWare is an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering

OSF is a free, open platform to support your research and enable collaboration. Discover projects, data, materials, and collaborators on OSF that might be helpful to your own research.

To support increased sharing of open research methodologies — and in an exciting extension to our partnership with protocols.io — we are announcing two new peer-reviewed article types in PLOS ONE in 2021: Lab Protocols and Study Protocols.

PROTOCOL EXCHANGE

The Protocol Exchange is an open repository for sharing scientific research protocols. These protocols are posted directly on the Protocol Exchange by authors and are made freely available to the scientific community for use and comment.

Bring structure to your research: A secure platform for developing and sharing reproducible methods.

ProViz is an interactive protein exploration tool, which searches several databases for information about a given query protein.

PubMed® comprises more than 33 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full text content from PubMed Central and publisher web sites.

The online journal club. PubPeer enables scientists to search for their publications or their peers publications and provide feedback and/or start a conversation anonymously.

Quartzy centralizes requests, approvals, orders and inventory management to improve your productivity.

Randomization.com where it's never the same thing twice.

RandoMice has been developed as a user-friendly tool that allows users to create well-balanced blocks of experimental units and randomly assign those blocks to experimental intervention groups.

RANDOMIZR FOR R

randomizr is designed to make conducting field, lab, survey, or online experiments easier by automating the random assignment process.

RESEARCH RANDOMIZER

Research Randomizer is a free resource for researchers and students in need of a quick way to generate random numbers or assign participants to experimental conditions. This site can be used for a variety of purposes, including psychology experiments, medical trials, and survey research.

ReproZip can automatically pack your research along with all necessary data files, libraries, environment variables and options into a self-contained bundle.

RETRACTION WATCH DATABASE

The most comprehensive source for retractions by a wide margin — surpassed 25,000 retractions

Use our carefully vetted, staff- and community-contributed R software tools that lower barriers to working with local and remote scientific data sources. Combine our tools with the rich ecosystem of R packages.

RESEARCH RABBIT

We’re starting with our Discovery app which unlocks a completely novel way to search for papers and authors, monitor new literature, visualize research landscapes, and collaborate with colleagues.

This is the Resource Identification Portal (RRID Portal), supporting guidelines for Rigor and Transparency in scientific publications. If you are an author, please find your key resources: Antibodies, Model Organisms, Cell Lines, Plasmids, and other Tools (software, databases, services). Just copy the RRID citation into your paper. If you can't find your resource add a new one, we make it easy (big green button on the bottom of this page).

SCIENTIFIC AMERICAN

Scientific American is the essential guide to the most awe-inspiring advances in science and technology

SciTechDaily: Home of the best science and technology news since 1998. Keep up with the latest scitech news via email or social media.

Scite is a Brooklyn-based startup that helps researchers better discover and evaluate scientific articles through Smart Citations

Science news: astronomy, archaeology, paleontology, health, physics, space exploration and other topics.

SciNote Electronic Lab Notebook (ELN). Our mission is to help humanity benefit the most from science and to preserve research data for future generations.

Scopus uniquely combines a comprehensive, expertly curated abstract and citation database with enriched data and linked scholarly literature across a wide variety of disciplines.

SEMANTIC SCHOLAR

Semantic Scholar uses groundbreaking AI and engineering to understand the semantics of scientific literature to help Scholars discover relevant research.

SPRINGER NATURE EXPERIMENTS

Springer Nature Experiments is a global publisher dedicated to providing the best possible service to the whole research community.

Protein-Protein Interaction Networks Functional Enrichment Analysis.

THE ACADEMIC PHRASEBANK

The Academic Phrasebank is a general resource for academic writers. It aims to provide you with examples of some of the phraseological ‘nuts and bolts’ of writing organised according to the main sections of a research paper or dissertation

The Turing Way project is open source, open collaboration, and community-driven. We involve and support a diverse community of contributors to make data science accessible, comprehensible and effective for everyone. Our goal is to provide all the information that researchers and data scientists in academia, industry and the public sector need to ensure that the projects they work on are easy to reproduce and reuse.

Notebooks in Visual Studio Code (VS Code) is a free code editor and development platform that you can use locally or connected to remote compute.

One of the largest and most authoritative collections of online journals, books, and research resources, covering life, health, social, and physical

Zenodo is a general-purpose open-access repository developed under the European OpenAIRE program and operated by CERN.

ZIRC is supported by an NIH grant from the Office of Research Infrastructure Programs (ORIP) in collaboration with the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD).

Index: Class Overview

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